set(prefiltering_header_files
        prefiltering/CacheFriendlyOperations.h
        prefiltering/ExtendedSubstitutionMatrix.h
        prefiltering/Indexer.h
        prefiltering/IndexBuilder.h
        prefiltering/IndexTable.h
        prefiltering/KmerGenerator.h
        prefiltering/Prefiltering.h
        prefiltering/PrefilteringIndexReader.h
        prefiltering/QueryMatcher.h
        prefiltering/QueryMatcherTaxonomyHook.h
        prefiltering/ReducedMatrix.h
        prefiltering/SequenceLookup.h
        prefiltering/UngappedAlignment.h
        PARENT_SCOPE
        )

set(prefiltering_source_files
        prefiltering/CacheFriendlyOperations.cpp
        prefiltering/ExtendedSubstitutionMatrix.cpp
        prefiltering/Indexer.cpp
        prefiltering/IndexBuilder.cpp
        prefiltering/KmerGenerator.cpp
        prefiltering/Main.cpp
        prefiltering/Prefiltering.cpp
        prefiltering/PrefilteringIndexReader.cpp
        prefiltering/QueryMatcher.cpp
        prefiltering/ReducedMatrix.cpp
        prefiltering/SequenceLookup.cpp
        prefiltering/UngappedAlignment.cpp
        prefiltering/ungappedprefilter.cpp
        PARENT_SCOPE
        )
